Homologs in group_4029

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4029

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4029

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O83768 8.9e-05 46 21 7 216 3 TP_0789 Uncharacterized protein TP_0789 Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05105
Feature type CDS
Gene -
Product outer membrane lipoprotein-sorting protein
Location 1088589 - 1089380 (strand: -1)
Length 792 (nucleotides) / 263 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4029
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF17131 Outer membrane lipoprotein-sorting protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2834 Cell wall/membrane/envelope biogenesis (M) M Outer membrane lipoprotein-sorting protein

Protein Sequence

MIFQTKWSAPLCLAFVFLFAGIRPALADINAQDILKRSDIVRNPQQPFTLVTTLISYKNGTQHEKSELRLYSRPDPHGGQYHSLLRFISPQRDVGKLTLKSGRDLWLYDPNSKASVPISPQQRLLGQASNGDVVTANWAADYSAAIIAEETIQDGYKQDRECYRLHLTATNPDAAYPSMELWVDKTNFKSLKAEFYAVNGSLLKTTFYRRYEEVLGGERPTEAVIIDGMNSQLVTVIRNQQFEWRDVPESWFQRDFLPHIRDD

Flanking regions ( +/- flanking 50bp)

AATGAATAAGGGTATAAAAAAATTAATCAGATCACAGGACGTAATATACCATGATATTTCAGACAAAATGGTCCGCCCCGTTGTGCCTCGCATTTGTATTTTTATTTGCAGGAATACGCCCGGCGCTGGCAGATATAAATGCGCAGGATATTCTGAAGAGAAGCGACATTGTCCGCAATCCGCAGCAACCATTCACGCTGGTCACAACATTAATCAGCTATAAAAATGGCACTCAGCATGAAAAAAGTGAACTGCGGCTTTATTCCCGCCCGGATCCTCACGGCGGACAGTATCACAGCCTGCTGCGGTTTATCAGCCCGCAACGTGATGTGGGAAAACTGACATTAAAAAGCGGGCGCGACCTCTGGTTGTATGATCCTAACAGCAAAGCCAGTGTGCCTATCTCACCACAGCAGCGGTTGTTAGGTCAGGCATCAAATGGTGATGTTGTGACGGCAAACTGGGCGGCAGATTACAGTGCGGCAATTATAGCGGAAGAAACTATTCAGGATGGATATAAACAGGATCGTGAATGTTATCGTCTGCATTTAACTGCAACGAATCCGGATGCTGCATATCCGTCCATGGAGCTGTGGGTCGATAAAACCAATTTTAAGAGCCTGAAAGCTGAGTTTTATGCCGTTAACGGTAGTCTTCTGAAAACCACTTTTTACCGGCGCTATGAAGAAGTCTTAGGCGGAGAGAGACCCACTGAAGCGGTAATTATTGATGGTATGAATTCGCAGTTGGTGACGGTTATCCGTAATCAGCAATTTGAATGGCGTGATGTGCCGGAGTCCTGGTTCCAGCGTGATTTTTTACCACATATCAGGGATGACTGATTTATGTGGAAGCATCACAGTTACCTGATTGCCGGTGTATCCTGTCTTGC