Homologs in group_641

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02095 FBDBKF_02095 92.9 Morganella morganii S1 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
EHELCC_02565 EHELCC_02565 92.9 Morganella morganii S2 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
NLDBIP_00895 NLDBIP_00895 92.9 Morganella morganii S4 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
LHKJJB_01140 LHKJJB_01140 92.9 Morganella morganii S3 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
HKOGLL_01180 HKOGLL_01180 92.9 Morganella morganii S5 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
PMI_RS05570 PMI_RS05570 70.7 Proteus mirabilis HI4320 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase

Distribution of the homologs in the orthogroup group_641

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_641

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24205 3.23e-145 415 61 0 311 1 lpxM Lipid A biosynthesis myristoyltransferase Escherichia coli (strain K12)
P59198 2.58e-144 412 61 0 311 2 lpxM1 Lipid A biosynthesis acyltransferase 1 Shigella flexneri
O06659 9.35e-132 380 57 1 309 2 lpxM2 Lipid A biosynthesis acyltransferase 2 Shigella flexneri
P44567 8.82e-94 284 43 1 306 3 lpxM Lipid A biosynthesis acyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0ACV0 2.99e-33 127 31 10 314 1 lpxL Lipid A biosynthesis lauroyltransferase Escherichia coli (strain K12)
P0ACV1 2.99e-33 127 31 10 314 3 lpxL Lipid A biosynthesis lauroyltransferase Escherichia coli O157:H7
P45239 4.73e-31 122 27 7 307 3 lpxL Lipid A biosynthesis acyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0ACV3 3.69e-25 105 26 7 313 3 lpxP Lipid A biosynthesis acyltransferase Shigella flexneri
P0ACV2 3.69e-25 105 26 7 313 1 lpxP Lipid A biosynthesis palmitoleoyltransferase Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04460
Feature type CDS
Gene lpxM
Product lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
Location 943408 - 944388 (strand: 1)
Length 981 (nucleotides) / 326 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_641
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03279 Bacterial lipid A biosynthesis acyltransferase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1560 Lipid transport and metabolism (I) I Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02560 lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] Lipopolysaccharide biosynthesis
Metabolic pathways		 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type

Protein Sequence

MYKETDTDSKAGYIPTFHRHYLHPKYWGMWAAAGALAGLTFLPVKLRDPMLAGIGKIAGRLAKSARRRALINLYYCFPDMPAAEREELADNMFASAPHAFVMLAELCLRNPQRVISRTQVHGQDIIDGLQAQGRNIIFMVPHGWAIDLPAMLFAAQGNKVAGMFHHQKNPVADYLWNKARVHFGGRLHSREAGIKPFIASVRNGYSGYYLPDQDHGAEHSEFVPFFSTYKATLPAIGRLMKVCKAAIVPLFPVYDHKNHQFHIHVRPPMDDIDGQDDPYIARRMNEEVEALVRPNIEQYTWILKLLKTRRDGEEEPYQRFKRKELP

Flanking regions ( +/- flanking 50bp)

TAGTTATAACACTATGATATATATGTTTAATTCAATATTGGTGTCCATCTGTGTATAAAGAAACCGATACAGACAGCAAAGCGGGATATATCCCGACATTTCACCGCCACTATCTGCACCCGAAATACTGGGGAATGTGGGCGGCGGCAGGCGCTCTGGCGGGGCTGACGTTTTTGCCGGTTAAATTACGTGATCCTATGCTGGCCGGTATTGGTAAAATTGCCGGACGCTTAGCCAAAAGTGCCCGTCGCAGGGCACTGATTAATCTTTATTACTGCTTTCCTGACATGCCTGCGGCAGAGCGGGAGGAATTGGCGGATAACATGTTTGCCAGTGCGCCTCATGCGTTTGTGATGCTGGCAGAGCTCTGTCTGCGTAATCCTCAGCGGGTTATTTCCCGCACACAAGTCCATGGGCAGGACATTATTGATGGCTTACAGGCGCAGGGGCGCAATATTATCTTTATGGTGCCGCATGGCTGGGCGATAGACTTACCGGCAATGTTGTTTGCTGCACAGGGAAATAAAGTCGCGGGCATGTTCCACCATCAGAAAAACCCGGTTGCAGACTATTTATGGAACAAAGCGCGGGTGCATTTCGGTGGGCGTCTGCATTCACGGGAAGCCGGAATTAAGCCATTTATTGCCAGTGTCCGTAATGGTTACAGTGGTTATTATCTGCCGGATCAGGATCATGGTGCAGAGCACAGTGAGTTTGTGCCGTTCTTCAGCACTTACAAAGCAACACTGCCGGCTATCGGGCGGCTGATGAAAGTCTGCAAAGCCGCGATTGTTCCGCTGTTTCCGGTGTACGATCATAAAAATCATCAGTTTCATATTCATGTGCGTCCGCCGATGGATGATATTGACGGGCAGGATGATCCGTATATCGCAAGGCGCATGAATGAAGAAGTGGAAGCACTTGTACGCCCGAATATTGAGCAGTACACCTGGATTCTGAAACTGCTGAAAACCCGTCGTGATGGCGAAGAAGAGCCATATCAGCGGTTCAAGAGAAAAGAATTGCCCTGACAGAGCCTTCATTACATCATAAAAAAACCGCCGGTCAGATGACCGGCGGT