Homologs in group_238

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01805 FBDBKF_01805 91.6 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_02275 EHELCC_02275 91.6 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_01185 NLDBIP_01185 91.6 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_00850 LHKJJB_00850 91.6 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_00890 HKOGLL_00890 91.6 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS06945 PMI_RS06945 74.0 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS11755 PMI_RS11755 64.5 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_238

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_238

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26458 9.43e-39 144 30 11 371 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P94365 1.02e-36 137 28 12 347 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)
P0ABK2 1.07e-36 139 27 9 365 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 1.07e-36 139 27 9 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 1.07e-36 139 27 9 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P45020 1e-34 133 29 11 372 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04130
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 872534 - 873541 (strand: -1)
Length 1008 (nucleotides) / 335 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_238
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MSIDLPLIWFVIIVFSTLMYIVMDGFDLGIGILYPFVKSNADRDLMMNSVAPVWDGNETWLVLGGAALFGAFPLAYAVILDALAIPLTLMLIALIFRGVAFEFRFKADEHHRYFWDRAFLTGSVITTFAQGVVVGSVIEGFPVENRAFAGGALDWFTPFALFCGLGLVVAYALLGCGWLVMKTEGHLQQQMYKVLKPLTGVMLVVLAIISLWTPLAHEAIAVRWFSFPNILFFLPVPLLVLVCVIALFRSASRHGHYTPFFAALALVFLGFTGLGISIWPMIIPPAIDYEMAAAPAESLSFMLVGALFIIPVILVYTWWSYYVFRGKITHDQGYH

Flanking regions ( +/- flanking 50bp)

CATCTATATGATGAAACTGATCCGCAAAGGTATCGCGACGGAGGTTCCTCATGAGCATTGATTTACCGCTGATTTGGTTCGTCATCATTGTATTCAGCACGCTGATGTATATCGTGATGGATGGTTTTGACTTAGGGATCGGCATCCTCTACCCCTTTGTGAAAAGCAATGCTGACCGCGACCTGATGATGAACAGTGTCGCACCGGTCTGGGACGGCAACGAAACCTGGCTGGTGCTGGGCGGCGCGGCACTGTTTGGTGCTTTTCCGCTGGCATACGCGGTTATTCTGGATGCGCTGGCTATTCCGCTGACGCTGATGCTTATTGCCCTGATTTTCCGGGGTGTCGCATTTGAGTTCCGTTTTAAAGCAGATGAACATCACCGCTATTTCTGGGATCGCGCCTTTCTGACCGGTTCTGTCATAACAACCTTTGCACAAGGTGTGGTTGTCGGCAGTGTGATTGAAGGTTTTCCGGTGGAAAACCGTGCTTTTGCAGGCGGCGCACTGGACTGGTTCACACCGTTTGCCCTCTTTTGCGGACTGGGATTGGTTGTCGCTTATGCGCTGCTCGGCTGTGGCTGGCTGGTGATGAAAACAGAAGGTCATCTGCAACAGCAGATGTATAAAGTACTGAAACCATTGACGGGGGTGATGCTGGTTGTGCTGGCAATTATCAGTCTGTGGACGCCGCTGGCGCATGAAGCAATTGCTGTCCGCTGGTTCAGTTTCCCGAATATTCTGTTTTTCCTGCCGGTTCCGCTGCTGGTGCTGGTCTGTGTTATCGCGCTGTTCCGCAGTGCCTCCCGTCACGGACATTACACACCGTTCTTCGCGGCACTGGCTTTGGTATTTCTTGGTTTTACCGGGCTTGGTATCAGTATCTGGCCGATGATTATCCCCCCGGCGATTGACTATGAAATGGCGGCAGCACCCGCTGAAAGTCTGAGCTTTATGTTAGTCGGTGCGCTGTTTATTATCCCTGTTATCCTGGTGTATACCTGGTGGAGTTATTATGTCTTCAGAGGAAAAATCACTCATGACCAAGGCTACCACTGAGTCTGCGGTGGACAGCAATTCCCCCTGGTGGAAAAAAGCCGGCTGGATGA