Homologs in group_4012

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4012

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4012

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77214 2.56e-27 99 46 2 114 1 cusF Cation efflux system protein CusF Escherichia coli (strain K12)
Q8CWA3 4.52e-27 99 45 2 114 3 cusF Cation efflux system protein CusF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XBY2 3.48e-26 97 45 2 114 3 cusF Cation efflux system protein CusF Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03925
Feature type CDS
Gene -
Product copper-binding protein
Location 832111 - 832458 (strand: 1)
Length 348 (nucleotides) / 115 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4012
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF11604 Copper binding periplasmic protein CusF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5569 Inorganic ion transport and metabolism (P) P Periplasmic Cu and Ag efflux protein CusF

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07810 Cu(I)/Ag(I) efflux system periplasmic protein CusF Two-component system -

Protein Sequence

MRLSLIVTLVAGMAAFSLPASANETHHNVSASVSASPVSQQVTEAVGTVRGIDAENKKITIDHDAIASLGWPAMQMRFTYTEATPQFTDLKEGDKVSFTFIQQENISLLQSISVR

Flanking regions ( +/- flanking 50bp)

GAACCTGCAGTTTGAATGAATAAGGGTATATTAAAATAAGGATACTTATTATGCGTCTATCTCTCATCGTCACATTAGTGGCGGGCATGGCAGCATTCTCACTGCCTGCGTCCGCCAATGAAACACATCACAATGTATCTGCATCTGTGTCTGCATCTCCGGTATCGCAGCAGGTTACCGAAGCCGTCGGTACTGTCAGGGGAATTGATGCGGAGAATAAAAAAATCACGATAGATCATGATGCTATCGCATCACTAGGCTGGCCCGCAATGCAGATGCGCTTTACCTATACAGAAGCTACACCGCAATTTACGGATCTGAAAGAAGGTGACAAAGTCAGCTTCACATTCATTCAGCAGGAAAATATTTCCCTTCTTCAGTCAATCTCAGTCCGGTAATTCACCGGCTATTTCCGGGGAACGGACATGGCATCTGCAACATTAAAATA