Homologs in group_552

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01345 FBDBKF_01345 77.7 Morganella morganii S1 vasI type VI secretion system-associated protein VasI
EHELCC_00200 EHELCC_00200 77.7 Morganella morganii S2 vasI type VI secretion system-associated protein VasI
NLDBIP_03260 NLDBIP_03260 77.7 Morganella morganii S4 vasI type VI secretion system-associated protein VasI
LHKJJB_04775 LHKJJB_04775 77.7 Morganella morganii S3 vasI type VI secretion system-associated protein VasI
HKOGLL_02270 HKOGLL_02270 77.7 Morganella morganii S5 vasI type VI secretion system-associated protein VasI
PMI_RS03630 PMI_RS03630 47.4 Proteus mirabilis HI4320 vasI type VI secretion system-associated protein VasI

Distribution of the homologs in the orthogroup group_552

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_552

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02325
Feature type CDS
Gene vasI
Product type VI secretion system-associated protein VasI
Location 493597 - 494244 (strand: -1)
Length 648 (nucleotides) / 215 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_552
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF11319 Type VI secretion system VasI, EvfG, VC_A0118

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11909 type VI secretion system protein VasI - -

Protein Sequence

MTKRIIRGMTALLLFTPLWSQAQPGPLLSDEMSALLATCRSEASPLVRLECYDNLGREKALPPVITPEKGSIWRRAMANEAQRSDHSVSFITSQPGEGTWPVIMTAPAIGTQPPRPVLMLSCVDNITRMQLVMNSPVTQRGIRLSTQQTTFSSDWFIRENGYVLESSRGLAGIDEIKRIMTGEKLTITPENGEPVTFDLTDLVQSIKPLRAACRW

Flanking regions ( +/- flanking 50bp)

GTCTCTAAACGTTCACTCATCTATAAATTAAAAAAATACGGGTACATGTCATGACCAAAAGGATTATCCGGGGAATGACGGCGTTGCTTTTGTTTACACCGTTATGGAGCCAGGCACAGCCGGGTCCCCTGCTTTCAGATGAAATGTCTGCATTACTGGCAACCTGCCGTTCAGAGGCGTCACCGCTTGTGCGCCTGGAGTGCTATGACAATCTTGGCAGAGAAAAAGCCTTACCGCCGGTTATAACACCAGAAAAAGGCAGCATCTGGCGCAGAGCCATGGCAAATGAAGCGCAACGCAGTGACCATTCAGTTTCATTTATCACCTCACAACCCGGTGAAGGGACCTGGCCTGTCATCATGACAGCACCGGCAATAGGCACTCAGCCACCGCGCCCGGTACTCATGCTGAGCTGTGTGGATAACATTACCCGGATGCAACTGGTGATGAACTCGCCGGTCACTCAGCGGGGGATACGGCTTTCCACACAACAGACAACGTTCAGCAGCGACTGGTTTATCCGGGAAAACGGCTATGTACTGGAGTCCAGCCGCGGGTTAGCCGGTATCGATGAGATAAAACGGATAATGACCGGAGAGAAACTGACGATCACACCTGAAAACGGAGAGCCGGTGACATTTGATCTGACAGATCTGGTTCAGAGTATCAAACCATTGCGTGCGGCCTGCCGTTGGTGAAAATAATGATAGCGACACGATTTAACTGGTCAGAGCAACTGCTGGCACCA