Homologs in group_1205

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06995 FBDBKF_06995 87.0 Morganella morganii S1 ybjN YbjN domain-containing protein
EHELCC_03975 EHELCC_03975 87.0 Morganella morganii S2 ybjN YbjN domain-containing protein
NLDBIP_03975 NLDBIP_03975 87.0 Morganella morganii S4 ybjN YbjN domain-containing protein
LHKJJB_09805 LHKJJB_09805 87.0 Morganella morganii S3 ybjN YbjN domain-containing protein
HKOGLL_09170 HKOGLL_09170 87.0 Morganella morganii S5 ybjN YbjN domain-containing protein
PMI_RS03330 PMI_RS03330 51.2 Proteus mirabilis HI4320 - YbjN domain-containing protein

Distribution of the homologs in the orthogroup group_1205

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1205

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAY9 2.22e-56 177 55 1 146 4 ybjN Uncharacterized protein YbjN Shigella flexneri
P0AAY6 2.22e-56 177 55 1 146 1 ybjN Uncharacterized protein YbjN Escherichia coli (strain K12)
P0AAY7 2.22e-56 177 55 1 146 4 ybjN Uncharacterized protein YbjN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAY8 2.22e-56 177 55 1 146 4 ybjN Uncharacterized protein YbjN Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01185
Feature type CDS
Gene -
Product YbjN domain-containing protein
Location 250992 - 251504 (strand: 1)
Length 513 (nucleotides) / 170 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1205
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF10722 Putative bacterial sensory transduction regulator

Protein Sequence

MIIPDLPVLRKWLDQLQHTCFECDSCEALHLPHMQNVDGVFDAKIDILDDTLVFSALAEVRPTAIIPLMANLSQINASSLLVKTFMDIQDSAMPKLVVCYSVPLAAGLTFEQFSLYLQQMEEQVGAVVFELFSNNMLFDPNDTEPEPGDESEDEGEESFHADDAPSPVIH

Flanking regions ( +/- flanking 50bp)

TATCATACGCGCCGTGCTGTTCGTTTTTTTGGTTAAAAGGCTTCAGATTCATGATCATTCCCGATCTTCCTGTATTACGTAAATGGCTGGATCAGCTACAACACACCTGCTTTGAATGCGACTCCTGTGAGGCGCTGCATTTACCCCACATGCAAAATGTGGATGGTGTGTTTGATGCGAAAATTGACATTCTTGATGACACGCTGGTTTTCTCGGCTCTTGCTGAGGTCAGACCGACCGCGATTATCCCGCTGATGGCAAACCTGAGTCAGATCAACGCCAGCTCCCTGCTGGTGAAAACATTTATGGATATCCAGGATTCTGCCATGCCGAAACTGGTCGTCTGTTACTCAGTGCCGCTGGCAGCGGGACTGACGTTTGAGCAATTCTCTTTGTATCTTCAGCAAATGGAAGAGCAGGTCGGGGCGGTTGTTTTTGAGTTATTCAGCAATAATATGCTGTTTGACCCGAATGACACGGAGCCTGAACCCGGAGATGAATCAGAAGATGAAGGTGAAGAGAGTTTTCACGCTGATGATGCGCCTTCTCCGGTTATCCATTAACTGCCAGCCCAGAATTTTCTGTCCAGGGAAATCACCATGCATTGCCCTCA