Homologs in group_1531

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09895 FBDBKF_09895 89.7 Morganella morganii S1 ybfE LexA regulated protein
EHELCC_04695 EHELCC_04695 89.7 Morganella morganii S2 ybfE LexA regulated protein
NLDBIP_04695 NLDBIP_04695 89.7 Morganella morganii S4 ybfE LexA regulated protein
LHKJJB_13935 LHKJJB_13935 89.7 Morganella morganii S3 ybfE LexA regulated protein
HKOGLL_12600 HKOGLL_12600 89.7 Morganella morganii S5 ybfE LexA regulated protein
PMI_RS02685 PMI_RS02685 76.3 Proteus mirabilis HI4320 ybfE LexA regulated protein

Distribution of the homologs in the orthogroup group_1531

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1531

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAU9 1.96e-42 136 74 0 91 4 ybfE Uncharacterized protein YbfE Shigella flexneri
P0AAU7 1.96e-42 136 74 0 91 1 ybfE Uncharacterized protein YbfE Escherichia coli (strain K12)
P0AAU8 1.96e-42 136 74 0 91 4 ybfE Uncharacterized protein YbfE Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00455
Feature type CDS
Gene ybfE
Product LexA regulated protein
Location 97397 - 97690 (strand: -1)
Length 294 (nucleotides) / 97 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1531
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01402 Ribbon-helix-helix protein, copG family

Protein Sequence

MAKEQTDRTTPDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVNGLRRVELKLSADIVDALNERAYEENVTRGELIEQILLEHLQSLNLCTKL

Flanking regions ( +/- flanking 50bp)

GTGTATCATTGCGCGTTTATCATCGTTATCCGCCTTTTCGTAGTAAAATTATGGCCAAAGAACAAACAGATCGTACCACCCCGGATTTGTTCGCAGATGAGCGCCGGCCCGGGCGACCGAAAACAAACCCGCTCTCCCGCGATGAGCAGTTGCGTATTAACAAACGCAATCAGTTACGGCGTGATAAGGTCAACGGATTGCGCCGCGTTGAACTCAAACTGAGTGCTGATATCGTGGATGCCTTAAATGAGCGGGCGTATGAGGAAAATGTAACCCGGGGTGAGCTGATTGAACAAATTCTGCTCGAACACCTTCAGAGTTTAAATCTGTGTACTAAGTTGTGAGACGACACACGGTTGTGAGACGACACACCACACAAATTTGACAGACTTCA