VFG042620


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG042620, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein phase variation DNA invertase MrpI
VF ID VF1233
Category Adherence
Protein ID WP_004247323
Vf_category_id VFC0001

Occurence in the database

VFG042620 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_22 FBDBKF_09050 25096 25659 1 xerD Site-specific recombinase XerD Morganella morganii S1
1 group_22 EHELCC_10360 120445 121008 -1 xerD Site-specific recombinase XerD Morganella morganii S2
2 group_22 NLDBIP_10705 98716 99279 -1 xerD Site-specific recombinase XerD Morganella morganii S4
3 group_22 LHKJJB_10650 92249 92812 1 xerD Site-specific recombinase XerD Morganella morganii S3
4 group_22 HKOGLL_13710 25550 26113 1 xerD Site-specific recombinase XerD Morganella morganii S5
5 group_22 F4V73_RS10920 325695 326258 -1 tyrosine-type DNA invertase Morganella psychrotolerans
6 group_22 PMI_RS01270 310101 310667 -1 mrpI phase variation DNA invertase MrpI Proteus mirabilis HI4320