VFG038840
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG038840, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.
Description
Protein |
short chain dehydrogenase/reductase family oxidoreductase |
VF ID |
VF0473 |
Category |
Motility |
Protein ID |
WP_005300916 |
Characteristics |
Types of bacterial movement: swimming, swarming, gliding, twitching and sliding. Only swimming and swarming are correlated with the presence of flagella. Swimming is an individual endeavour, while swarming is the movement of a group of bacteria; constitutively expressed for motility in liquid environments |
Function |
Necessary for motility, adhesion and invasion; glycosylation of the flagellin may play a role in provoking a proinflammatory response |
Vf_category_id |
VFC0204 |
Occurence in the database
VFG038840 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_55 |
FBDBKF_14715 |
40774 |
41508 |
-1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella morganii S1 |
1 |
group_55 |
EHELCC_15520 |
70850 |
71584 |
-1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella morganii S2 |
2 |
group_55 |
NLDBIP_16050 |
70850 |
71584 |
-1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella morganii S4 |
3 |
group_55 |
LHKJJB_15790 |
45102 |
45836 |
1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella morganii S3 |
4 |
group_55 |
HKOGLL_14910 |
44314 |
45048 |
1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella morganii S5 |
5 |
group_55 |
F4V73_RS07510 |
1569496 |
1570230 |
-1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Morganella psychrotolerans |
6 |
group_55 |
PMI_RS04225 |
951173 |
951907 |
1 |
fabG |
3-oxoacyl-ACP reductase FabG |
Proteus mirabilis HI4320 |