VFG013200


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG013200, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein uroporphyrinogen decarboxylase
VF ID VF0758
Category Nutritional/Metabolic factor
Protein ID WP_012341396
Vf_category_id VFC0272

Occurence in the database

VFG013200 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2300 FBDBKF_17680 32292 33359 1 hemE uroporphyrinogen decarboxylase Morganella morganii S1
1 group_2300 EHELCC_18165 31668 32735 1 hemE uroporphyrinogen decarboxylase Morganella morganii S2
2 group_2300 NLDBIP_17985 6002 7069 -1 hemE uroporphyrinogen decarboxylase Morganella morganii S4
3 group_2300 LHKJJB_18180 6002 7069 -1 hemE uroporphyrinogen decarboxylase Morganella morganii S3
4 group_2300 HKOGLL_18020 31668 32735 1 hemE uroporphyrinogen decarboxylase Morganella morganii S5
5 group_2300 PMI_RS13700 3043645 3044718 -1 hemE uroporphyrinogen decarboxylase Proteus mirabilis HI4320