VFG010906


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG010906, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein carbon storage regulator CsrA
VF ID VF0261
Category Regulation
Protein ID WP_011213314
Characteristics Belongs to a highly conserved family of global regulators that typically control stationary phase traits post-transcriptionally
Function Post-transcriptional repression of the transmission regulon
Mechanism Binds to particular mRNAs at a consensus sequence encompassing the ribosome binding site (RBS), destabilizing the mRNAs and preventing their translation
Vf_category_id VFC0301

Occurence in the database

VFG010906 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2035 FBDBKF_15245 62752 62943 1 csrA carbon storage regulator CsrA Morganella morganii S1
1 group_2035 EHELCC_11000 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S2
2 group_2035 NLDBIP_11345 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S4
3 group_2035 LHKJJB_11205 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S3
4 group_2035 HKOGLL_09815 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S5
5 group_2035 F4V73_RS12200 21333 21524 -1 csrA carbon storage regulator CsrA Morganella psychrotolerans
6 group_2035 PMI_RS01805 430412 430600 1 csrA carbon storage regulator CsrA Proteus mirabilis HI4320