VFG010906


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Virulence factor VFG010906
Protein list: lists the 7 occurences of the Virulence factor within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Virulence factor of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factor has been clustered.
Orthogroups are shown in red if they are annotated with that particular Virulence factor in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Virulence factor prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factor.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factor prediction.

Description

Protein carbon storage regulator CsrA
VF ID VF0261
Category Regulation
Protein ID WP_011213314
Characteristics Belongs to a highly conserved family of global regulators that typically control stationary phase traits post-transcriptionally
Function Post-transcriptional repression of the transmission regulon
Mechanism Binds to particular mRNAs at a consensus sequence encompassing the ribosome binding site (RBS), destabilizing the mRNAs and preventing their translation
Vf_category_id VFC0301

Occurence in the database

VFG010906 is associated with 7 different proteins
The 7 proteins are classified into 1 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2075 FBDBKF_15245 62752 62943 1 csrA carbon storage regulator CsrA Morganella morganii S1
1 group_2075 EHELCC_11000 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S2
2 group_2075 NLDBIP_11345 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S4
3 group_2075 LHKJJB_11205 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S3
4 group_2075 HKOGLL_09815 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S5
5 group_2075 F4V73_RS12200 21333 21524 -1 csrA carbon storage regulator CsrA Morganella psychrotolerans
6 group_2075 PMI_RS01805 430412 430600 1 csrA carbon storage regulator CsrA Proteus mirabilis HI4320