PF22456


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22456, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF22456
Description PQQ synthase PqqF-like, C-terminal lobe domain 4

Occurence in the database

PF22456 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1084 FBDBKF_06160 57192 60074 -1 ptrA pitrilysin Morganella morganii S1
1 group_1084 EHELCC_09205 57764 60646 -1 ptrA pitrilysin Morganella morganii S2
2 group_1084 NLDBIP_09585 57764 60646 -1 ptrA pitrilysin Morganella morganii S4
3 group_1084 LHKJJB_08170 156592 159474 1 ptrA pitrilysin Morganella morganii S3
4 group_1084 HKOGLL_07720 156592 159474 1 ptrA pitrilysin Morganella morganii S5
5 group_1084 F4V73_RS15755 154078 156960 1 ptrA pitrilysin Morganella psychrotolerans
6 group_1084 PMI_RS11425 2515360 2518248 -1 ptrA pitrilysin Proteus mirabilis HI4320