PF21680


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21680, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21680
Description tRNA modifying enzyme MnmG/GidA C-terminal helical domain

Occurence in the database

PF21680 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2063 FBDBKF_15450 15645 17534 1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella morganii S1
1 group_2063 EHELCC_15810 14945 16834 1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella morganii S2
2 group_2063 NLDBIP_16560 63829 65718 -1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella morganii S4
3 group_2063 LHKJJB_16245 14945 16834 1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella morganii S3
4 group_2063 HKOGLL_16015 14945 16834 1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella morganii S5
5 group_2063 F4V73_RS17695 179607 181496 -1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Morganella psychrotolerans
6 group_2063 PMI_RS15130 3358281 3360179 1 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Proteus mirabilis HI4320