PF20974


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20974, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20974
Description tRNA synthetases class I (E and Q), anti-codon binding domain

Occurence in the database

PF20974 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1534 FBDBKF_09910 76675 78342 -1 glnS glutamine--tRNA ligase Morganella morganii S1
1 group_1534 EHELCC_04710 268640 270307 -1 glnS glutamine--tRNA ligase Morganella morganii S2
2 group_1534 NLDBIP_04710 268436 270103 -1 glnS glutamine--tRNA ligase Morganella morganii S4
3 group_1534 LHKJJB_13920 65275 66942 1 glnS glutamine--tRNA ligase Morganella morganii S3
4 group_1534 HKOGLL_12615 77456 79123 -1 glnS glutamine--tRNA ligase Morganella morganii S5
5 group_1534 F4V73_RS00440 94257 95924 1 glnS glutamine--tRNA ligase Morganella psychrotolerans
6 group_1534 PMI_RS02660 580915 582582 1 glnS glutamine--tRNA ligase Proteus mirabilis HI4320