PF20155


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20155, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20155
Description Tape measure protein

Occurence in the database

PF20155 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_105 FBDBKF_00060 9783 13106 -1 Tape measure domain-containing protein Morganella morganii S1
1 group_105 FBDBKF_11485 91590 94946 1 tape measure protein Morganella morganii S1
2 group_105 EHELCC_01485 295762 299085 1 Tape measure domain-containing protein Morganella morganii S2
3 group_105 EHELCC_17730 5769 9125 -1 tape measure protein Morganella morganii S2
4 group_105 NLDBIP_01975 381051 384374 -1 Tape measure domain-containing protein Morganella morganii S4
5 group_105 NLDBIP_05060 5595 8951 -1 tape measure protein Morganella morganii S4
6 group_105 LHKJJB_00060 8311 11634 1 Tape measure domain-containing protein Morganella morganii S3
7 group_105 LHKJJB_19175 5256 8612 -1 tape measure protein Morganella morganii S3
8 group_105 HKOGLL_00100 13822 17145 1 Tape measure domain-containing protein Morganella morganii S5
9 group_105 HKOGLL_15320 6559 9915 -1 tape measure protein Morganella morganii S5
10 group_4243 F4V73_RS18185 79344 83390 -1 tape measure protein Morganella psychrotolerans
11 group_105 PMI_RS04590 1013533 1016808 1 phage tail tape measure protein Proteus mirabilis HI4320