PF20030


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20030, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20030
Description MoxR domain in the MoxR-vWA-beta-propeller ternary systems

Occurence in the database

PF20030 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2058 FBDBKF_15425 10120 11646 1 ravA ATPase RavA Morganella morganii S1
1 group_2058 EHELCC_15785 9420 10946 1 ravA ATPase RavA Morganella morganii S2
2 group_2058 NLDBIP_16585 69717 71243 -1 ravA ATPase RavA Morganella morganii S4
3 group_2058 LHKJJB_16220 9420 10946 1 ravA ATPase RavA Morganella morganii S3
4 group_2058 HKOGLL_15990 9420 10946 1 ravA ATPase RavA Morganella morganii S5
5 group_2058 F4V73_RS17720 185489 187000 -1 ravA ATPase RavA Morganella psychrotolerans
6 group_2058 PMI_RS15105 3352781 3354280 1 ravA ATPase RavA Proteus mirabilis HI4320