PF19833


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF19833, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF19833
Description ATP-dependent DNA helicase RecG, domain 3, C-terminal

Occurence in the database

PF19833 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1728 FBDBKF_12060 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S1
1 group_1728 EHELCC_14245 69888 71969 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S2
2 group_1728 NLDBIP_15340 73825 75906 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S4
3 group_1728 LHKJJB_15270 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S3
4 group_1728 HKOGLL_14390 49399 51480 1 recG ATP-dependent DNA helicase RecG Morganella morganii S5
5 group_1728 F4V73_RS14585 149565 151646 -1 recG ATP-dependent DNA helicase RecG Morganella psychrotolerans
6 group_1728 PMI_RS14165 3143801 3145888 1 recG ATP-dependent DNA helicase RecG Proteus mirabilis HI4320