PF18113


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18113, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18113
Description Rubredoxin binding C-terminal domain

Occurence in the database

PF18113 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2532 FBDBKF_02325 154176 155312 1 norW NADH:flavorubredoxin reductase NorW Morganella morganii S1
1 group_2532 EHELCC_02795 541996 543132 1 norW NADH:flavorubredoxin reductase NorW Morganella morganii S2
2 group_2532 NLDBIP_00665 137004 138140 -1 norW NADH:flavorubredoxin reductase NorW Morganella morganii S4
3 group_2532 LHKJJB_01370 254545 255681 1 norW NADH:flavorubredoxin reductase NorW Morganella morganii S3
4 group_2532 HKOGLL_01410 260056 261192 1 norW NADH:flavorubredoxin reductase NorW Morganella morganii S5
5 group_2532 F4V73_RS04700 992541 993677 1 norW NADH:flavorubredoxin reductase NorW Morganella psychrotolerans