PF17864


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17864, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17864
Description RuvB AAA lid domain

Occurence in the database

PF17864 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_636 FBDBKF_02065 101072 102082 1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella morganii S1
1 group_636 EHELCC_02535 488892 489902 1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella morganii S2
2 group_636 NLDBIP_00925 190234 191244 -1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella morganii S4
3 group_636 LHKJJB_01110 201441 202451 1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella morganii S3
4 group_636 HKOGLL_01150 206952 207962 1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella morganii S5
5 group_636 F4V73_RS04430 936914 937924 1 ruvB Holliday junction branch migration DNA helicase RuvB Morganella psychrotolerans
6 group_636 PMI_RS05415 1184154 1185164 1 ruvB Holliday junction branch migration DNA helicase RuvB Proteus mirabilis HI4320