PF17820


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17820, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17820
Description PDZ domain

Occurence in the database

PF17820 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_720 FBDBKF_03145 30824 32218 1 degQ serine endoprotease DegQ Morganella morganii S1
1 group_1055 FBDBKF_05975 21000 22355 -1 rseP sigma E protease regulator RseP Morganella morganii S1
2 group_720 EHELCC_07390 214885 216279 -1 degQ serine endoprotease DegQ Morganella morganii S2
3 group_1055 EHELCC_09020 21572 22927 -1 rseP sigma E protease regulator RseP Morganella morganii S2
4 group_720 NLDBIP_07715 214758 216152 -1 degQ serine endoprotease DegQ Morganella morganii S4
5 group_1055 NLDBIP_09400 21572 22927 -1 rseP sigma E protease regulator RseP Morganella morganii S4
6 group_720 LHKJJB_07250 178504 179898 -1 degQ serine endoprotease DegQ Morganella morganii S3
7 group_1055 LHKJJB_08355 194311 195666 1 rseP sigma E protease regulator RseP Morganella morganii S3
8 group_720 HKOGLL_03680 53489 54883 1 degQ serine endoprotease DegQ Morganella morganii S5
9 group_1055 HKOGLL_07905 194311 195666 1 rseP sigma E protease regulator RseP Morganella morganii S5
10 group_1055 F4V73_RS15920 190925 192280 1 rseP sigma E protease regulator RseP Morganella psychrotolerans
11 group_1055 PMI_RS11250 2476538 2477890 -1 rseP sigma E protease regulator RseP Proteus mirabilis HI4320