PF17768


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17768, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17768
Description RecJ OB domain

Occurence in the database

PF17768 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_816 FBDBKF_04090 3326 5059 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S1
1 group_816 EHELCC_05380 62783 64516 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S2
2 group_816 NLDBIP_05700 103848 105581 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S4
3 group_816 LHKJJB_02580 81372 83105 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S3
4 group_816 HKOGLL_06055 3236 4969 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S5
5 group_816 F4V73_RS08530 1761313 1763046 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella psychrotolerans
6 group_816 PMI_RS09910 2149944 2151677 -1 recJ single-stranded-DNA-specific exonuclease RecJ Proteus mirabilis HI4320