PF16931


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16931, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16931
Description Putative phage holin

Occurence in the database

PF16931 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3187 FBDBKF_01545 822 1193 1 Phage holin Morganella morganii S1
1 group_3349 FBDBKF_11345 73351 73740 1 Phage holin Morganella morganii S1
2 group_3187 EHELCC_02015 388642 389013 1 Phage holin Morganella morganii S2
3 group_3349 EHELCC_17870 26975 27364 -1 Phage holin Morganella morganii S2
4 group_3187 NLDBIP_01445 291123 291494 -1 Phage holin Morganella morganii S4
5 group_3349 NLDBIP_05200 26801 27190 -1 Phage holin Morganella morganii S4
6 group_3187 LHKJJB_00590 101191 101562 1 Phage holin Morganella morganii S3
7 group_3349 LHKJJB_02080 4325 4714 -1 Phage holin Morganella morganii S3
8 group_3187 HKOGLL_00630 106702 107073 1 Phage holin Morganella morganii S5
9 group_3349 HKOGLL_15460 27765 28154 -1 Phage holin Morganella morganii S5