PF16078


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16078, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16078
Description 2-oxoglutarate dehydrogenase N-terminus

Occurence in the database

PF16078 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1519 FBDBKF_09820 58688 61492 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S1
1 group_1519 EHELCC_04620 250653 253457 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S2
2 group_1519 NLDBIP_04620 250449 253253 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S4
3 group_1519 LHKJJB_14010 82125 84929 1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S3
4 group_1519 HKOGLL_12525 59469 62273 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S5
5 group_1519 F4V73_RS00525 111011 113833 1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella psychrotolerans
6 group_1519 PMI_RS02800 613789 616593 1 sucA 2-oxoglutarate dehydrogenase E1 component Proteus mirabilis HI4320