PF13997


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13997, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13997
Description YqjK-like protein

Occurence in the database

PF13997 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_702 FBDBKF_03025 7332 7634 1 ftsH Cell division protein FtsH Morganella morganii S1
1 group_702 EHELCC_07510 239469 239771 -1 ftsH Cell division protein FtsH Morganella morganii S2
2 group_702 NLDBIP_07835 239342 239644 -1 ftsH Cell division protein FtsH Morganella morganii S4
3 group_702 LHKJJB_07370 203088 203390 -1 ftsH Cell division protein FtsH Morganella morganii S3
4 group_702 HKOGLL_03560 29997 30299 1 ftsH Cell division protein FtsH Morganella morganii S5
5 group_702 F4V73_RS11890 532012 532317 -1 YqjK-like family protein Morganella psychrotolerans
6 group_702 PMI_RS18395 4036297 4036602 -1 YqjK-like family protein Proteus mirabilis HI4320