PF13995


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13995, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13995
Description YebF-like protein

Occurence in the database

PF13995 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_579 FBDBKF_01655 24470 24853 1 yebF protein YebF Morganella morganii S1
1 group_579 EHELCC_02125 412290 412673 1 yebF protein YebF Morganella morganii S2
2 group_579 NLDBIP_01335 267463 267846 -1 yebF protein YebF Morganella morganii S4
3 group_579 LHKJJB_00700 124839 125222 1 yebF protein YebF Morganella morganii S3
4 group_579 HKOGLL_00740 130350 130733 1 yebF protein YebF Morganella morganii S5
5 group_579 F4V73_RS03995 847655 848038 1 yebF protein YebF Morganella psychrotolerans
6 group_579 PMI_RS07825 1714220 1714615 -1 yebF protein YebF Proteus mirabilis HI4320