PF13980


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13980, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13980
Description Uncharacterised protein family (UPF0370)

Occurence in the database

PF13980 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1829 FBDBKF_13550 88023 88220 1 UPF0370 protein CRX48_07430 Morganella morganii S1
1 group_1829 EHELCC_08545 186971 187168 -1 UPF0370 protein CRX48_07430 Morganella morganii S2
2 group_1829 NLDBIP_08870 186971 187168 -1 UPF0370 protein CRX48_07430 Morganella morganii S4
3 group_1829 LHKJJB_05395 69991 70188 1 UPF0370 protein CRX48_07430 Morganella morganii S3
4 group_1829 HKOGLL_05520 171562 171759 -1 UPF0370 protein CRX48_07430 Morganella morganii S5
5 group_1829 F4V73_RS03215 686127 686330 -1 YpfN family protein Morganella psychrotolerans
6 group_1829 PMI_RS07590 1656288 1656485 1 YpfN family protein Proteus mirabilis HI4320