PF13942


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13942, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13942
Description YfhG lipoprotein

Occurence in the database

PF13942 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_535 FBDBKF_01190 222279 223073 -1 qseG two-component system QseEF-associated lipoprotein QseG Morganella morganii S1
1 group_535 EHELCC_00355 85795 86589 1 qseG two-component system QseEF-associated lipoprotein QseG Morganella morganii S2
2 group_535 NLDBIP_03105 593547 594341 -1 qseG two-component system QseEF-associated lipoprotein QseG Morganella morganii S4
3 group_535 LHKJJB_04620 200788 201582 -1 qseG two-component system QseEF-associated lipoprotein QseG Morganella morganii S3
4 group_535 HKOGLL_02425 86000 86794 1 qseG two-component system QseEF-associated lipoprotein QseG Morganella morganii S5
5 group_535 F4V73_RS07260 1511075 1511854 -1 qseG two-component system QseEF-associated lipoprotein QseG Morganella psychrotolerans
6 group_535 PMI_RS09245 2015226 2016152 -1 qseG two-component system QseEF-associated lipoprotein QseG Proteus mirabilis HI4320