PF13675


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13675, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13675
Description Type IV pili methyl-accepting chemotaxis transducer N-term

Occurence in the database

PF13675 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1476 FBDBKF_09510 143912 145654 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S1
1 group_1476 EHELCC_09900 450 2192 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S2
2 group_1476 NLDBIP_19220 448 2190 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S4
3 group_1476 LHKJJB_19150 19879 21621 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S3
4 group_1476 HKOGLL_18930 19879 21621 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S5
5 group_1476 F4V73_RS10460 208798 210498 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella psychrotolerans
6 group_1476 PMI_RS17755 3895690 3897519 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Proteus mirabilis HI4320