PF13617


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13617, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13617
Description YnbE-like lipoprotein

Occurence in the database

PF13617 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_662 FBDBKF_02350 161152 161343 1 Lipoprotein Morganella morganii S1
1 group_662 EHELCC_02820 548972 549163 1 Lipoprotein Morganella morganii S2
2 group_662 NLDBIP_00640 130973 131164 -1 Lipoprotein Morganella morganii S4
3 group_662 LHKJJB_01395 261521 261712 1 Lipoprotein Morganella morganii S3
4 group_662 HKOGLL_01435 267032 267223 1 Lipoprotein Morganella morganii S5
5 group_662 F4V73_RS04730 999830 1000021 1 YnbE family lipoprotein Morganella psychrotolerans
6 group_662 PMI_RS05710 1245137 1245343 1 YnbE family lipoprotein Proteus mirabilis HI4320