PF13525


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13525, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13525
Description Outer membrane lipoprotein

Occurence in the database

PF13525 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2049 FBDBKF_15355 79108 79881 -1 bamD outer membrane protein assembly factor BamD Morganella morganii S1
1 group_2049 EHELCC_10890 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S2
2 group_2049 NLDBIP_11235 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S4
3 group_2049 LHKJJB_11095 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S3
4 group_2049 HKOGLL_09705 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S5
5 group_2049 F4V73_RS12100 5141 5866 1 bamD outer membrane protein assembly factor BamD Morganella psychrotolerans
6 group_2049 PMI_RS01905 447090 447824 -1 bamD outer membrane protein assembly factor BamD Proteus mirabilis HI4320