PF13495


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13495, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13495
Description Phage integrase, N-terminal SAM-like domain

Occurence in the database

PF13495 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3639 FBDBKF_20630 33 899 1 xerD integron integrase Morganella morganii S1
1 group_3639 EHELCC_19910 33 899 1 xerD integron integrase Morganella morganii S2
2 group_3639 NLDBIP_19905 203 1216 -1 intI1 class 1 integron integrase IntI1 Morganella morganii S4
3 group_3639 LHKJJB_19875 203 1069 -1 xerD integron integrase Morganella morganii S3
4 group_3639 HKOGLL_19705 33 899 1 xerD integron integrase Morganella morganii S5