PF13479


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13479, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13479
Description AAA domain

Occurence in the database

PF13479 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3157 FBDBKF_00310 42217 43089 1 ATP-binding protein Morganella morganii S1
1 group_3157 EHELCC_01235 265779 266651 -1 ATP-binding protein Morganella morganii S2
2 group_3157 NLDBIP_02225 413485 414357 1 ATP-binding protein Morganella morganii S4
3 group_3157 LHKJJB_03740 20726 21598 1 ATP-binding protein Morganella morganii S3
4 group_3157 HKOGLL_03305 265984 266856 -1 ATP-binding protein Morganella morganii S5