PF13401


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13401, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13401
Description AAA domain

Occurence in the database

PF13401 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3621 FBDBKF_20300 7697 8467 1 ATP-binding protein Morganella morganii S1
1 group_3621 EHELCC_19070 8693 9463 -1 ATP-binding protein Morganella morganii S2
2 group_3621 NLDBIP_19545 1976 2746 -1 ATP-binding protein Morganella morganii S4
3 group_3621 LHKJJB_19520 7697 8467 1 ATP-binding protein Morganella morganii S3
4 group_3621 HKOGLL_19425 1976 2746 -1 ATP-binding protein Morganella morganii S5