PF13396


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13396, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13396
Description Phospholipase_D-nuclease N-terminal

Occurence in the database

PF13396 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_958 FBDBKF_05255 56827 58287 1 cls cardiolipin synthase Morganella morganii S1
1 group_958 EHELCC_12335 123207 124667 -1 cls cardiolipin synthase Morganella morganii S2
2 group_958 NLDBIP_12675 123162 124622 -1 cls cardiolipin synthase Morganella morganii S4
3 group_958 LHKJJB_12535 123207 124667 -1 cls cardiolipin synthase Morganella morganii S3
4 group_958 HKOGLL_11150 123207 124667 -1 cls cardiolipin synthase Morganella morganii S5
5 group_958 F4V73_RS05710 1213421 1214881 1 cls cardiolipin synthase Morganella psychrotolerans
6 group_958 PMI_RS06550 1436041 1437501 1 cls cardiolipin synthase Proteus mirabilis HI4320