PF13350


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13350, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13350
Description Tyrosine phosphatase family

Occurence in the database

PF13350 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2219 FBDBKF_16955 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S1
1 group_2219 EHELCC_16635 49143 49925 1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S2
2 group_2219 NLDBIP_16845 49143 49925 1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S4
3 group_2219 LHKJJB_16625 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S3
4 group_2219 HKOGLL_17590 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S5
5 group_2219 F4V73_RS18425 18734 19513 -1 tyrosine-protein phosphatase Morganella psychrotolerans
6 group_2219 PMI_RS17560 3855367 3856149 1 tyrosine-protein phosphatase Proteus mirabilis HI4320