PF13310


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13310, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13310
Description Virulence protein RhuM family

Occurence in the database

PF13310 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_93 FBDBKF_10305 14458 15483 -1 rhuM Uncharacterized protein RhuM, Salmonella virulence factor Morganella morganii S1
1 group_93 FBDBKF_15640 59505 60539 -1 DNA-binding protein Morganella morganii S1
2 group_93 EHELCC_14640 14448 15473 -1 rhuM Uncharacterized protein RhuM, Salmonella virulence factor Morganella morganii S2
3 group_93 EHELCC_15995 58805 59839 -1 DNA-binding protein Morganella morganii S2
4 group_93 NLDBIP_14470 14448 15473 -1 rhuM Uncharacterized protein RhuM, Salmonella virulence factor Morganella morganii S4
5 group_93 NLDBIP_16370 20824 21858 1 DNA-binding protein Morganella morganii S4
6 group_93 LHKJJB_14875 126253 127278 1 rhuM Uncharacterized protein RhuM, Salmonella virulence factor Morganella morganii S3
7 group_93 LHKJJB_16430 58805 59839 -1 DNA-binding protein Morganella morganii S3
8 group_93 HKOGLL_13495 126253 127278 1 rhuM Uncharacterized protein RhuM, Salmonella virulence factor Morganella morganii S5
9 group_93 HKOGLL_16200 58805 59839 -1 DNA-binding protein Morganella morganii S5
10 group_93 F4V73_RS14005 10353 11396 -1 rhuM RhuM family protein Morganella psychrotolerans
11 group_93 PMI_RS14850 3296230 3297264 -1 rhuM RhuM family protein Proteus mirabilis HI4320