PF13188


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13188, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13188
Description PAS domain

Occurence in the database

PF13188 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2767 FBDBKF_07775 75987 77837 1 AAA domain-containing protein Morganella morganii S1
1 group_2767 EHELCC_13605 50181 52031 1 AAA domain-containing protein Morganella morganii S2
2 group_2767 NLDBIP_14050 71056 72906 1 AAA domain-containing protein Morganella morganii S4
3 group_2767 LHKJJB_08800 86843 88693 -1 AAA domain-containing protein Morganella morganii S3
4 group_2767 HKOGLL_08350 86843 88693 -1 AAA domain-containing protein Morganella morganii S5
5 group_2767 F4V73_RS13270 280123 282030 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans