PF12974


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12974, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12974
Description ABC transporter, phosphonate, periplasmic substrate-binding protein

Occurence in the database

PF12974 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_495 FBDBKF_00900 163157 164911 1 ttrS tetrathionate respiration histidine kinase TtrS Morganella morganii S1
1 group_495 EHELCC_00645 143957 145711 -1 ttrS tetrathionate respiration histidine kinase TtrS Morganella morganii S2
2 group_495 NLDBIP_02815 534425 536179 1 ttrS tetrathionate respiration histidine kinase TtrS Morganella morganii S4
3 group_495 LHKJJB_04330 141666 143420 1 ttrS tetrathionate respiration histidine kinase TtrS Morganella morganii S3
4 group_495 HKOGLL_02715 144162 145916 -1 ttrS tetrathionate respiration histidine kinase TtrS Morganella morganii S5
5 group_495 F4V73_RS06895 1428904 1430652 1 ttrS tetrathionate respiration histidine kinase TtrS Morganella psychrotolerans
6 group_495 PMI_RS08240 1800265 1802028 1 ttrS tetrathionate respiration histidine kinase TtrS Proteus mirabilis HI4320