PF12790


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12790, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12790
Description Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113

Occurence in the database

PF12790 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_550 FBDBKF_01320 255633 256172 1 tssJ type VI secretion system lipoprotein TssJ Morganella morganii S1
1 group_550 EHELCC_00225 52696 53235 -1 tssJ type VI secretion system lipoprotein TssJ Morganella morganii S2
2 group_550 NLDBIP_03235 626901 627440 1 tssJ type VI secretion system lipoprotein TssJ Morganella morganii S4
3 group_550 LHKJJB_04750 234142 234681 1 tssJ type VI secretion system lipoprotein TssJ Morganella morganii S3
4 group_550 HKOGLL_02295 52901 53440 -1 tssJ type VI secretion system lipoprotein TssJ Morganella morganii S5
5 group_3718 F4V73_RS00040 11417 11926 -1 tssJ type VI secretion system lipoprotein TssJ Morganella psychrotolerans
6 group_550 F4V73_RS02350 499855 500394 -1 tssJ type VI secretion system lipoprotein TssJ Morganella psychrotolerans
7 group_4063 F4V73_RS06985 1450067 1450549 -1 tssJ type VI secretion system lipoprotein TssJ Morganella psychrotolerans
8 group_3718 F4V73_RS09350 1968093 1968653 -1 tssJ type VI secretion system lipoprotein TssJ Morganella psychrotolerans
9 group_3718 F4V73_RS16735 169363 169917 -1 tssJ type VI secretion system lipoprotein TssJ Morganella psychrotolerans
10 group_550 PMI_RS03655 822767 823318 -1 tssJ type VI secretion system lipoprotein TssJ Proteus mirabilis HI4320