PF12729


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12729, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12729
Description Four helix bundle sensory module for signal transduction

Occurence in the database

PF12729 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2600 FBDBKF_03410 85309 86874 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
1 group_3005 FBDBKF_17640 24270 25847 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
2 group_2600 EHELCC_07125 160229 161794 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
3 group_3005 EHELCC_18125 23646 25223 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
4 group_2600 NLDBIP_07450 160102 161667 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
5 group_3005 NLDBIP_18025 13514 15091 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
6 group_2600 LHKJJB_06985 123848 125413 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
7 group_3005 LHKJJB_18220 13514 15091 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
8 group_2600 HKOGLL_03945 107974 109539 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
9 group_3005 HKOGLL_17980 23646 25223 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
10 group_2600 F4V73_RS11490 443332 444897 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
11 group_3005 F4V73_RS15020 242882 244459 1 methyl-accepting chemotaxis protein Morganella psychrotolerans