PF12500


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12500, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12500
Description TRSP domain C terminus to PRTase_2

Occurence in the database

PF12500 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1855 FBDBKF_13875 69280 70422 1 Adenine/guanine phosphoribosyltransferase Morganella morganii S1
1 group_1855 EHELCC_11545 154156 155298 1 Adenine/guanine phosphoribosyltransferase Morganella morganii S2
2 group_1855 NLDBIP_11890 154156 155298 1 Adenine/guanine phosphoribosyltransferase Morganella morganii S4
3 group_1855 LHKJJB_11750 154156 155298 1 Adenine/guanine phosphoribosyltransferase Morganella morganii S3
4 group_1855 HKOGLL_10360 154156 155298 1 Adenine/guanine phosphoribosyltransferase Morganella morganii S5
5 group_1855 F4V73_RS12740 147926 149068 1 phosphoribosyltransferase domain-containing protein Morganella psychrotolerans
6 group_1855 PMI_RS11820 2612706 2613851 1 phosphoribosyltransferase domain-containing protein Proteus mirabilis HI4320