PF12404


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12404, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12404
Description Peptidase

Occurence in the database

PF12404 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_519 FBDBKF_01100 205489 206784 -1 pepB aminopeptidase PepB Morganella morganii S1
1 group_519 EHELCC_00445 102084 103379 1 pepB aminopeptidase PepB Morganella morganii S2
2 group_519 NLDBIP_03015 576757 578052 -1 pepB aminopeptidase PepB Morganella morganii S4
3 group_519 LHKJJB_04530 183998 185293 -1 pepB aminopeptidase PepB Morganella morganii S3
4 group_519 HKOGLL_02515 102289 103584 1 pepB aminopeptidase PepB Morganella morganii S5
5 group_519 F4V73_RS07170 1493451 1494746 -1 pepB aminopeptidase PepB Morganella psychrotolerans
6 group_519 PMI_RS09145 1995460 1996755 -1 pepB aminopeptidase PepB Proteus mirabilis HI4320