PF12122


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12122, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12122
Description Cytoplasmic N-terminal domain of rhomboid serine protease

Occurence in the database

PF12122 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1621 FBDBKF_10690 106381 107214 -1 glpG rhomboid family intramembrane serine protease GlpG Morganella morganii S1
1 group_1621 EHELCC_15025 106371 107204 -1 glpG rhomboid family intramembrane serine protease GlpG Morganella morganii S2
2 group_1621 NLDBIP_14855 106371 107204 -1 glpG rhomboid family intramembrane serine protease GlpG Morganella morganii S4
3 group_1621 LHKJJB_14490 34522 35355 1 glpG rhomboid family intramembrane serine protease GlpG Morganella morganii S3
4 group_1621 HKOGLL_13110 34522 35355 1 glpG rhomboid family intramembrane serine protease GlpG Morganella morganii S5
5 group_1621 F4V73_RS14405 109590 110423 -1 glpG rhomboid family intramembrane serine protease GlpG Morganella psychrotolerans
6 group_1621 PMI_RS14475 3209751 3210590 1 glpG rhomboid family intramembrane serine protease GlpG Proteus mirabilis HI4320