PF11990


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11990, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11990
Description Protein of unknown function (DUF3487)

Occurence in the database

PF11990 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2636 FBDBKF_03995 198167 198583 -1 TIGR03750 family conjugal transfer protein Morganella morganii S1
1 group_3485 FBDBKF_16820 43050 43427 -1 TIGR03750 family conjugal transfer protein Morganella morganii S1
2 group_2636 EHELCC_06540 48520 48936 1 TIGR03750 family conjugal transfer protein Morganella morganii S2
3 group_3485 EHELCC_10640 170344 170721 1 TIGR03750 family conjugal transfer protein Morganella morganii S2
4 group_2636 NLDBIP_06865 48393 48809 1 TIGR03750 family conjugal transfer protein Morganella morganii S4
5 group_3485 NLDBIP_10985 148615 148992 1 TIGR03750 family conjugal transfer protein Morganella morganii S4
6 group_2636 LHKJJB_06400 12139 12555 1 TIGR03750 family conjugal transfer protein Morganella morganii S3
7 group_3485 LHKJJB_10370 42536 42913 -1 TIGR03750 family conjugal transfer protein Morganella morganii S3
8 group_2636 HKOGLL_04530 220832 221248 -1 TIGR03750 family conjugal transfer protein Morganella morganii S5
9 group_3485 HKOGLL_16535 42545 42922 -1 TIGR03750 family conjugal transfer protein Morganella morganii S5
10 group_2636 PMI_RS12750 2821091 2821507 -1 TIGR03750 family conjugal transfer protein Proteus mirabilis HI4320