PF11987


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11987, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11987
Description Translation-initiation factor 2

Occurence in the database

PF11987 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1404 FBDBKF_08670 114429 117161 1 infB translation initiation factor IF-2 Morganella morganii S1
1 group_1404 EHELCC_12855 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S2
2 group_1404 NLDBIP_13195 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S4
3 group_1404 LHKJJB_13360 113147 115879 1 infB translation initiation factor IF-2 Morganella morganii S3
4 group_1404 HKOGLL_11670 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S5
5 group_1404 F4V73_RS09895 81592 84327 1 infB translation initiation factor IF-2 Morganella psychrotolerans
6 group_1404 PMI_RS17025 3744710 3747460 1 infB translation initiation factor IF-2 Proteus mirabilis HI4320