PF11920


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11920, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11920
Description Protein of unknown function (DUF3438)

Occurence in the database

PF11920 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_120 FBDBKF_03985 196637 197533 -1 TIGR03749 family integrating conjugative element protein Morganella morganii S1
1 group_120 FBDBKF_16810 41598 42401 -1 TIGR03749 family integrating conjugative element protein Morganella morganii S1
2 group_120 EHELCC_06550 49570 50466 1 TIGR03749 family integrating conjugative element protein Morganella morganii S2
3 group_120 EHELCC_10650 171370 172173 1 TIGR03749 family integrating conjugative element protein Morganella morganii S2
4 group_120 NLDBIP_06875 49443 50339 1 TIGR03749 family integrating conjugative element protein Morganella morganii S4
5 group_120 NLDBIP_10995 149641 150444 1 TIGR03749 family integrating conjugative element protein Morganella morganii S4
6 group_120 LHKJJB_06410 13189 14085 1 TIGR03749 family integrating conjugative element protein Morganella morganii S3
7 group_120 LHKJJB_10360 41084 41887 -1 TIGR03749 family integrating conjugative element protein Morganella morganii S3
8 group_120 HKOGLL_04520 219302 220198 -1 TIGR03749 family integrating conjugative element protein Morganella morganii S5
9 group_120 HKOGLL_16525 41093 41896 -1 TIGR03749 family integrating conjugative element protein Morganella morganii S5
10 group_120 PMI_RS12740 2819561 2820457 -1 TIGR03749 family integrating conjugative element protein Proteus mirabilis HI4320