PF11898


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11898, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11898
Description Domain of unknown function (DUF3418)

Occurence in the database

PF11898 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_664 FBDBKF_02365 162564 166535 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S1
1 group_664 EHELCC_02835 550384 554355 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S2
2 group_664 NLDBIP_00625 125781 129752 -1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S4
3 group_664 LHKJJB_01410 262933 266904 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S3
4 group_664 HKOGLL_01450 268444 272415 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S5
5 group_664 F4V73_RS04745 1001257 1005150 1 hrpA ATP-dependent RNA helicase HrpA Morganella psychrotolerans
6 group_664 PMI_RS05750 1252744 1256640 1 hrpA ATP-dependent RNA helicase HrpA Proteus mirabilis HI4320