PF11398


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11398, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11398
Description Protein of unknown function (DUF2813)

Occurence in the database

PF11398 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_183 FBDBKF_07035 70773 72455 1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S1
1 group_183 EHELCC_03935 113731 115413 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S2
2 group_183 NLDBIP_03935 113527 115209 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S4
3 group_183 LHKJJB_09765 113641 115323 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S3
4 group_183 HKOGLL_09210 75729 77411 1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S5
5 group_183 F4V73_RS01225 258343 260028 1 ATP-dependent endonuclease Morganella psychrotolerans
6 group_183 PMI_RS03370 743309 744982 1 ATP-dependent endonuclease Proteus mirabilis HI4320