PF10458


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF10458, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF10458
Description Valyl tRNA synthetase tRNA binding arm

Occurence in the database

PF10458 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1429 FBDBKF_08830 145011 147908 -1 valS valine--tRNA ligase Morganella morganii S1
1 group_1429 EHELCC_12695 15817 18714 1 valS valine--tRNA ligase Morganella morganii S2
2 group_1429 NLDBIP_13035 15817 18714 1 valS valine--tRNA ligase Morganella morganii S4
3 group_1429 LHKJJB_13520 143729 146626 -1 valS valine--tRNA ligase Morganella morganii S3
4 group_1429 HKOGLL_11510 15817 18714 1 valS valine--tRNA ligase Morganella morganii S5
5 group_1429 F4V73_RS10050 115491 118346 -1 valine--tRNA ligase Morganella psychrotolerans
6 group_1429 PMI_RS17255 3787654 3790542 -1 valine--tRNA ligase Proteus mirabilis HI4320