PF10135


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF10135, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF10135
Description Rod binding protein

Occurence in the database

PF10135 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_465 FBDBKF_00675 112931 113908 -1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella morganii S1
1 group_465 EHELCC_00870 194960 195937 1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella morganii S2
2 group_465 NLDBIP_02590 484199 485176 -1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella morganii S4
3 group_465 LHKJJB_04105 91440 92417 -1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella morganii S3
4 group_465 HKOGLL_02940 195165 196142 1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella morganii S5
5 group_465 F4V73_RS06685 1389760 1390737 -1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Morganella psychrotolerans
6 group_465 PMI_RS08035 1757382 1758368 -1 flgJ flagellar assembly peptidoglycan hydrolase FlgJ Proteus mirabilis HI4320